PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G121700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family DBB
Protein Properties Length: 179aa    MW: 20108.8 Da    PI: 4.9126
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G121700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.1e-07443538
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          C+ + + e++l C  ++  lC+ C +e H        H+
  Manes.10G121700.1.p  4 QCDICRQAEAELLCCADEAVLCKRCDEEVHAAnklsqkHQ 43
                         7*****************************6556666665 PP
2zf-B_box346.1e-115698238
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         + + C++++ek+  lfC +++ llC++C  ++H+       H+
  Manes.10G121700.1.p 56 QLPLCDTCQEKKGYLFCLEDRALLCKQCDISTHSTspyamsHQ 98
                         7899*****************************6677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.983147IPR000315B-box-type zinc finger
CDDcd000217.13E-7347No hitNo description
SMARTSM003361.3E-8447IPR000315B-box-type zinc finger
PfamPF006432.1E-5444IPR000315B-box-type zinc finger
SuperFamilySSF578455.86E-55293No hitNo description
PROSITE profilePS5011910.28155102IPR000315B-box-type zinc finger
SMARTSM003365.7E-1255102IPR000315B-box-type zinc finger
PfamPF006431.7E-85698IPR000315B-box-type zinc finger
CDDcd000212.12E-758102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKIQCDICRQ AEAELLCCAD EAVLCKRCDE EVHAANKLSQ KHQRLFLLKD SSSCSQLPLC  60
DTCQEKKGYL FCLEDRALLC KQCDISTHST SPYAMSHQRF LISGIKVTLE SSAEHSRDQH  120
SRMQMSMESS FYSPPAKESL AAIMMDSEAP STETMNEIFE NTDFSFYDFS EVGSSKIN*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G121700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626690.11e-129B-box zinc finger protein 23-like
SwissprotQ9SYM21e-45BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2C9V5F51e-127A0A2C9V5F5_MANES; Uncharacterized protein
STRINGXP_006441859.18e-58(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1837746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-36light-regulated zinc finger protein 1