PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G110600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 685aa MW: 78761.9 Da PI: 7.9649 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.3 | 1.9e-21 | 66 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+e+A+++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a ++++k++ + +w+vt + ++Hn Manes.10G110600.1.p 66 EFYSEFARRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTANENKPQRNRKSSRCGCQAYMRISKTTelgTPEWRVTGFANHHN 155 6**************9998877356667999***************999**********************9988889************ PP FAR1 87 Hela 90 Hel Manes.10G110600.1.p 156 HELL 159 **96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.7E-18 | 66 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-20 | 282 | 373 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.705 | 560 | 593 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.0E-7 | 563 | 591 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.2E-6 | 568 | 595 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MRNMMSEEAG QMLVVYDEPS EQRSLSLDDT SSTEESPDET RLSLETSNDA IPYVGQRFAT 60 HDAAYEFYSE FARRCGFSIR RHRTEGKDGV GKGLTRRYFV CHRAGNTPVK TANENKPQRN 120 RKSSRCGCQA YMRISKTTEL GTPEWRVTGF ANHHNHELLE PNQVRFLPAY RTISDMDKSR 180 ILMFAKTGIS VQQMMRLMEL EKCVEPGYLP FTEKDVRNLL QSFRKLDPED ESIDLLRMCR 240 NIREKDPNFK FEYTLDSNNR LENIAWSYPS SIQSYEIFGD AVVFDTTHRL TAFDMPLGIW 300 VGVNNYGMSC FFGCVLLREE NLRSLSWALK AFLGFMSGKA PQTILTDQNM CLKEAIAMEM 360 PTTKHALCIW MIVAKFPSWF NAVLGERYNE WKAEFHRLYN LESVEDFELG WRDMVNSFEL 420 HNNRHITNLY ALRTLWALPY LRSHFFAGMT ATGHSKSINA FIQRFLSAQT RLAHFVEQVA 480 VAIDFKDQAA EQQTMQQNLQ NICLKTGAPM ESHAASVLTP YAFSKLQEQL VLAAHYASFQ 540 MEDGYLVRHH TKLEGGRKVY WVPREGIISC SCHQFEFSGI LCRHALRVLS TGNCFQIPER 600 YLPIRWRKIS ISPAKPLLNS SNDHGERMQL LQNMVSTLIT ESSKSKERMD IATEQVSILL 660 SRIREQPIPG SHGVRDIATI HRNL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G110600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625666.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_021625667.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A251K136 | 0.0 | A0A251K136_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002947m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G110600.1.p |
Publications ? help Back to Top | |||
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