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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G106000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 299aa MW: 32835 Da PI: 8.343 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.3 | 3.3e-32 | 77 | 134 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + vrY+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e e Manes.10G106000.1.p 77 KMVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEIEGE 134 679**************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-25 | 79 | 137 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.3E-29 | 79 | 131 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-31 | 80 | 131 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.559 | 81 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-30 | 214 | 280 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.44E-19 | 217 | 279 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.1E-26 | 218 | 274 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00781 | 219 | 272 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MELSSHEAGE IPIPISSSYG GGHGHGHGHG HGHMIHHDHH SPHNHIISSL APQMPSNNGP 60 SSMPSAVEDH HHAPFKKMVR YRECLKNHAA AMGGNATDGC GEFMPSGEEG TIEALTCSAC 120 NCHRNFHRKE IEGEASSCEF YTSNPHFSRF GRKLILGHHK NILAPEALGY NFPSRAAAAA 180 PHHQMMQLSY NMGSLPSESD EQEDGGGIIM ARPAQLVKKR VRTKFTQEQK EKMLNFAEKV 240 GWKIQKQEEA VVQQLCQEIG VKRRVLKVWM HNNKHNLAKK NNHSSPPITS PTATATTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-22 | 217 | 276 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G106000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021626493.1 | 0.0 | zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 1e-76 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2C9V572 | 0.0 | A0A2C9V572_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022170m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 6e-68 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G106000.1.p |