PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G090800.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 332aa    MW: 37388.8 Da    PI: 7.5695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G090800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13152199355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Manes.10G090800.2.p 152 QDHTIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 199
                          67**************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.164149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17149214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-11152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.42E-13154203No hitNo description
SMARTSM003534.8E-15155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEMEESSFID QWPMNSIDDP SLPSLVAAFG ENMHHSFNLK NSMEAASPNT LAIVRPSKQL  60
KPNGFNSSKT TDYNLQNPEA AFSPNVLYFA NSTNPYQMGF VKPKEEAVCS RNFDAFTSDM  120
LVSPENQNFM FKACQGAQRF SSNNSSRHSQ TQDHTIAERK RREKLSQRFI ALSAIVPGLK  180
KMDKASVLGD AIKYLKQLQE RVKTLEEETK EKIIESVVIV KKSHLLFCED ESSFSDESLS  240
KVFVNKPLPE IEARICDKQV LIRIHCEKKK GVLKKTVAEI EKLHLTVVNS SVLTFGSFAL  300
DVTIIAQMED EFGMSVKDLV KNLHSSFKLF M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14153208863Transcription factor MYC2
5gnj_B6e-14153208863Transcription factor MYC2
5gnj_E6e-14153208863Transcription factor MYC2
5gnj_F6e-14153208863Transcription factor MYC2
5gnj_G6e-14153208863Transcription factor MYC2
5gnj_I6e-14153208863Transcription factor MYC2
5gnj_M6e-14153208863Transcription factor MYC2
5gnj_N6e-14153208863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G090800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625603.10.0transcription factor bHLH25-like isoform X1
TrEMBLA0A2C9V4N30.0A0A2C9V4N3_MANES; Uncharacterized protein
STRINGcassava4.1_021039m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-55bHLH family protein