PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G090800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 344aa    MW: 38817.4 Da    PI: 7.5693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G090800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13152199355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Manes.10G090800.1.p 152 QDHTIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 199
                          67**************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-17149214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.164149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-11152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-12154203No hitNo description
SMARTSM003534.8E-15155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEMEESSFID QWPMNSIDDP SLPSLVAAFG ENMHHSFNLK NSMEAASPNT LAIVRPSKQL  60
KPNGFNSSKT TDYNLQNPEA AFSPNVLYFA NSTNPYQMGF VKPKEEAVCS RNFDAFTSDM  120
LVSPENQNFM FKACQGAQRF SSNNSSRHSQ TQDHTIAERK RREKLSQRFI ALSAIVPGLK  180
KMDKASVLGD AIKYLKQLQE RVKTLEEETK EKIIESVVIV KKSHLLFCED ESSFSDESLS  240
KVFVNKPLPE IEARICDKQV LIRIHCEKKK GVLKKTVAEI EKLHLTVVNS SVLTFGSFAL  300
DVTIIAQSGK NENLNWEQKM EDEFGMSVKD LVKNLHSSFK LFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14153208863Transcription factor MYC2
5gnj_B7e-14153208863Transcription factor MYC2
5gnj_E7e-14153208863Transcription factor MYC2
5gnj_F7e-14153208863Transcription factor MYC2
5gnj_G7e-14153208863Transcription factor MYC2
5gnj_I7e-14153208863Transcription factor MYC2
5gnj_M7e-14153208863Transcription factor MYC2
5gnj_N7e-14153208863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G090800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625606.10.0transcription factor bHLH25-like isoform X3
TrEMBLA0A2C9V6R30.0A0A2C9V6R3_MANES; Uncharacterized protein
STRINGcassava4.1_021039m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-52bHLH family protein