PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G083400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 317aa    MW: 35301.1 Da    PI: 8.4745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G083400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13146191454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+r+N +f  Lr+++P+       K++Ka+ L  Av YI++L
  Manes.10G083400.1.p 146 NHVEAERQRRERLNRRFYALRSVVPNV-----SKMDKASLLADAVTYINEL 191
                          799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-11350IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.01E-4141195No hitNo description
SuperFamilySSF474591.44E-18142210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.053142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10146191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-18146210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYECERVKEA RIHGLQTLTC VSTPYGVVEL GSSNTIDKDW SLVQLCKSLF GGDAACFVSR  60
DPSHESHLQI LNSSFLDIGM FSASQKETST LKQNEGDKNK DAATIQGRSS SDSARSDSDG  120
NFAAENPDRF KKRSRKQLNG KELPLNHVEA ERQRRERLNR RFYALRSVVP NVSKMDKASL  180
LADAVTYINE LKAKVDELES KLQAVPKKCK TTKVTENQSS DSTIDHIRSS SSFKPKSMEL  240
DVKIVGSEAL IRFLSPDVNH PGAKLMEVLK EIEFKIHHAS MSSIKEMVLQ DVVARVPDGL  300
TDEEVVRSAI LQKMQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27140203266Transcription factor MYC2
5gnj_B2e-27140203266Transcription factor MYC2
5gnj_E2e-27140203266Transcription factor MYC2
5gnj_F2e-27140203266Transcription factor MYC2
5gnj_G2e-27140203266Transcription factor MYC2
5gnj_I2e-27140203266Transcription factor MYC2
5gnj_M2e-27140203266Transcription factor MYC2
5gnj_N2e-27140203266Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G083400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663576.10.0transcription factor MYC2-like
TrEMBLA0A2C9V6010.0A0A2C9V601_MANES; Uncharacterized protein
STRINGcassava4.1_006882m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.16e-43bHLH family protein