PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G083200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 352aa MW: 38170 Da PI: 4.4709

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G083200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.6e-11	277	317	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Manes.10G083200.1.p 277 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 317 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.313	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	269	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-12	272	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-12	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.71E-12	276	321	No hit	No description
Pfam	PF00010	3.4E-8	277	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0016049	Biological Process	cell growth
GO:0048766	Biological Process	root hair initiation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEPIGVSLEG EWSSLSGMYR SEEAVFLAQL LGNNDSSSCF GVPSSFWSSH DSEMNMAAVN 60 EDSVDTNFYN FSQGSSCYSG GSNFLFATSS QESYFLNDSH AVLVSNNSSM SMDFCVGDVI 120 NTVSYLVEGD DCLNQEISNG NVEEYGGNQQ PEAADFPDKQ EMLVPEQLTE DKSGKPPEIS 180 KKRSRNAGDA QKNKRNARSK KSQKLASGNN NAEECNAGVN VPATSSCCSE DDSNGSHELN 240 GGANSSLSLK GTPALNLNGR TRASRGAATD PQSLYARKRR ERINERLKIL QNLVPNGTKV 300 DISTMLEEAV NYVKFLQLQI KLLSSDDLWM YAPIAYNGMD IGLDLKLSTA R*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEPIGVSLEG EWSSLSGMYR SEEAVFLAQL LGNNDSSSCF GVPSSFWSSH DSEMNMAAVN  60
EDSVDTNFYN FSQGSSCYSG GSNFLFATSS QESYFLNDSH AVLVSNNSSM SMDFCVGDVI  120
NTVSYLVEGD DCLNQEISNG NVEEYGGNQQ PEAADFPDKQ EMLVPEQLTE DKSGKPPEIS  180
KKRSRNAGDA QKNKRNARSK KSQKLASGNN NAEECNAGVN VPATSSCCSE DDSNGSHELN  240
GGANSSLSLK GTPALNLNGR TRASRGAATD PQSLYARKRR ERINERLKIL QNLVPNGTKV  300
DISTMLEEAV NYVKFLQLQI KLLSSDDLWM YAPIAYNGMD IGLDLKLSTA R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G083200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624651.1	0.0	transcription factor bHLH84-like
Swissprot	Q84WK0	1e-72	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A2C9V4L6	0.0	A0A2C9V4L6_MANES; Uncharacterized protein
STRING	cassava4.1_026804m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF807	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	4e-75	ROOT HAIR DEFECTIVE 6-LIKE 2

Link Out ? help Back to Top
Phytozome	Manes.10G083200.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]