PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G065600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 491aa    MW: 56057 Da    PI: 4.8416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G065600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-11441488347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          rW+ eE++ l ++vk++G g+Wk+I          Rt+ ++k++w++ 
  Manes.10G065600.1.p 441 RWSVEEEDALREGVKMFGRGSWKAILDFKRdifDDRTEVDLKDKWRNM 488
                          9*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.79E-14436489IPR009057Homeodomain-like
PROSITE profilePS5129412.241436490IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-11437490IPR009057Homeodomain-like
SMARTSM007178.0E-6438490IPR001005SANT/Myb domain
CDDcd116608.41E-18440490No hitNo description
PfamPF002497.9E-10441488IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDSEEMDPEI VLWIIEFLTR QDSVPKVLLN RILTNTHIPI SPTPRLKKTL ALRAIQDEIA  60
SGSVASETIL ESLEIIEQLD QKQRIKILDS MKLAYCAVAV ECTVKHMWVV GSKRKRDPET  120
FFEAVKTIWR ERVEKLEFLK KSELVTDELR EFKEEMEAAL WDSNACERLL ERAMRNEALR  180
LVMDYLREAL DEMGPPLLEM LARTEKEREE EEKDADNVGE KASREPDGGV ADGSAKMETQ  240
SNDMFHTVNN LKGPGVIMDS EKVGVDIPTY KYDNLPTPEV NRAKEALKSS SMELKALLND  300
PLPNALNFSE SLMPERQALN KEILVEDQVG KRVDVPNPSV DVVVPVEIPN PSVTQAIEPI  360
QTMKNSAGIP IYNHQNVAPK RSLMEYNSTA RTYEWDDSID GSPEDASGMS RFNLDKPRTK  420
VVSPLKEYKI PKFAGRRKFK RWSVEEEDAL REGVKMFGRG SWKAILDFKR DIFDDRTEVD  480
LKDKWRNMTK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G065600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626099.10.0uncharacterized protein LOC110624934
TrEMBLA0A2C9V3V10.0A0A2C9V3V1_MANES; Uncharacterized protein
STRINGcassava4.1_006375m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-14TRF-like 5