PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G042900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 217aa    MW: 23701.1 Da    PI: 7.1631
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G042900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.83.2e-42601591100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r da+ss+vyeA+ar+rdP+yG++g i +lq+q+++l
  Manes.10G042900.1.p  60 PCAACKILRRRCAEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQEIPESHRADAVSSMVYEANARIRDPIYGCAGAICQLQKQVNEL 149
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +a+l+++++e
  Manes.10G042900.1.p 150 QAQLVTAQAE 159
                          *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.80359160IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-4260157IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGNLDKAVAV SSPFSYSPPS FSSSSSSISP SSQSSPTLPP PPPPPHPSPH PSTPCVVLSP  60
CAACKILRRR CAEKCVLAPY FPPTEPYKFT IAHRVFGASN IIKFLQEIPE SHRADAVSSM  120
VYEANARIRD PIYGCAGAIC QLQKQVNELQ AQLVTAQAEV VNMKSQQANL VALICMEKMT  180
QSHHLQEPIF QHHQYVDTSC FLDETNLGTP WEPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-40511623113LOB family transfactor Ramosa2.1
5ly0_B4e-40511623113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G042900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626368.11e-159LOB domain-containing protein 1-like
SwissprotQ9LQR06e-71LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2C9V4E21e-157A0A2C9V4E2_MANES; Uncharacterized protein
STRINGcassava4.1_026238m1e-158(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-73LOB domain-containing protein 1