PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

ERF

Protein Properties

Length: 241aa MW: 26187.3 Da PI: 8.7425

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G031600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.1	1.2e-19	38	88	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr + +gr++AeIrdp + ++r++lg+f++ae+Aa+a++aa+++l+g Manes.10G031600.1.p 38 PRYRGVRKRT-WGRFAAEIRDPLK---KTRVWLGTFDSAEDAARAYDAAALSLRG 88 68***887.******743...5***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.2E-13	38	88	IPR001471	AP2/ERF domain
CDD	cd00018	2.37E-18	38	95	No hit	No description
SuperFamily	SSF54171	6.54E-22	39	97	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.5E-31	39	96	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.077	39	96	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-36	39	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-10	40	51	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-10	62	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MRRRRAAAAA AATTAAATEG VVEPNGSAPQ NIIKGKEPRY RGVRKRTWGR FAAEIRDPLK 60 KTRVWLGTFD SAEDAARAYD AAALSLRGPK AKTNFVISSS HLSPFTYQNP PDSFMDHRLY 120 TADGFDEHHV NPQRPTSSSQ SSTVESFSGP RPPVSTTATK RSRILLSATA PKKTHQRTQP 180 MVPEDCQSDC DSSSSVIDDG DIASSSSLSC RKPLPFDLNF PPMDQVDFVI DDLQCTGLCL 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-19	34	95	2	62	ATERF1
3gcc_A	8e-19	34	95	2	62	ATERF1
5wx9_A	1e-18	33	95	8	71	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:15994908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G031600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624615.1	1e-178	ethylene-responsive transcription factor 3-like
Swissprot	Q9LDE4	5e-54	ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBL	A0A2C9V2Z7	1e-176	A0A2C9V2Z7_MANES; Uncharacterized protein
STRING	cassava4.1_025568m	1e-177	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2263	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20310.1	1e-39	ethylene response factor 7

Link Out ? help Back to Top
Phytozome	Manes.10G031600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Giuntoli B,Perata P Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles. Plant Physiol., 2018. 176(2): p. 1143-1155 [PMID:29269576]