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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Manes.10G031300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
B3 |
| Protein Properties |
Length: 463aa MW: 53407.5 Da PI: 10.1681 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.10G031300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 54.2 | 2.7e-17 | 9 | 101 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
ffkv + + + + l +p++f++++g++ s ++le +sgr+W+v+l +k +++++l++GW+eF + L g f+vF++++r
Manes.10G031300.1.p 9 FFKVILDETIHDK-KLGIPRRFVRKYGKD--LSSPVVLEVPSGRTWQVEL--KKWDDEIWLQNGWQEFLEYYSLTHGFFLVFEYTKRnCH 93
6666655555554.59**********977..6667***************..999999***************************88677 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
f +v +f+k
Manes.10G031300.1.p 94 F--NVIIFDK 101
7..9999987 PP
|
| 2 | B3 | 61.7 | 1.2e-19 | 231 | 335 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkld. 85
f+ ++ ps+v+ l + +fa ++ kk++s + tl ++grsW vk+ ++ +++ +++GW++F+k+n+L++gD++ F+l+
Manes.10G031300.1.p 231 FLVAMQPSYVHPAVKLNIQARFAVKYFPKKRQSGDATLHGLDGRSWPVKFYLynraCNEKRMAKISQGWRNFAKDNHLEVGDVCAFELIm 320
6788999******9************8899999*****************4368888888889************************665 PP
.SSSEE..EEEEE-S CS
B3 86 .grsefelvvkvfrk 99
++s++++ v++fr+
Manes.10G031300.1.p 321 iKSSKATFQVTIFRH 335
46699999***9997 PP
|
| 3 | B3 | 56.7 | 4.4e-18 | 366 | 460 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
ffkv +++ + +++++++p kf+ +++++++e+++l++e+ r W vkl+ + g+ +t+GW+ Fv+ n Lk+gD+++F+l+++++
Manes.10G031300.1.p 366 FFKVVISPGSVENSNMCVPMKFI-SNMKQSTEKVKLQIEN---RWWLVKLNLYPQLGKGKFTDGWSAFVRGNSLKVGDVCIFELNNSENL 451
899999999999999********.6655656666666666...99*****9988888888************************999*** PP
..EEEEE-S CS
B3 91 elvvkvfrk 99
+l+v++fr+
Manes.10G031300.1.p 452 QLKVTIFRN 460
*******96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MFETDRPHFF KVILDETIHD KKLGIPRRFV RKYGKDLSSP VVLEVPSGRT WQVELKKWDD 60
EIWLQNGWQE FLEYYSLTHG FFLVFEYTKR NCHFNVIIFD KSASEIDYPI NVVTNGDFLE 120
GIQEPKIIQE TARDSSAETL EDFMPCRKRK EKSPLPSPLP HKMMKVENPT GNTALHFPGK 180
QDEGKRVDGE ISGQKQTSDT IVLRKKPLKA KEKNEALRRA STNFKSKNPF FLVAMQPSYV 240
HPAVKLNIQA RFAVKYFPKK RQSGDATLHG LDGRSWPVKF YLYNRACNEK RMAKISQGWR 300
NFAKDNHLEV GDVCAFELIM IKSSKATFQV TIFRHHRGKK QKLKDEESNS PEAIEAAKSF 360
TSVHPFFKVV ISPGSVENSN MCVPMKFISN MKQSTEKVKL QIENRWWLVK LNLYPQLGKG 420
KFTDGWSAFV RGNSLKVGDV CIFELNNSEN LQLKVTIFRN VK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 2e-13 | 204 | 459 | 22 | 141 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 2e-13 | 204 | 459 | 22 | 141 | B3 domain-containing transcription factor VRN1 |
| Search in ModeBase |
