PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G022100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 749aa MW: 86991.5 Da PI: 6.8094

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G022100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.1	4.7e-26	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+l+vk++ +gkw+++++++eHnHel Manes.10G022100.1.p 28 SFYKEYAKSVGFGTAKLSSRRSRASREFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASLHVKRRPNGKWYIYSFVKEHNHELL 113 5**************************************999877....9**********************************97 PP FAR1 91 p 91 p Manes.10G022100.1.p 114 P 114 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-24	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-31	227	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	508	544	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.0E-7	514	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-7	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MDSNITTGST IYEPRDDMVF DSHEDAYSFY KEYAKSVGFG TAKLSSRRSR ASREFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASLH VKRRPNGKWY IYSFVKEHNH ELLPAQVHFF 120 RSHRNADPLK NDARIRRRKN MTAVSKLFGA YQNVDCLDGY MRNQHDKGRS LVLEAGDAQI 180 LLELFMHMQE ENPKFFYAVD FNEEHKLRNL FWVDAKGMED YNNFGDVVCF DTTYFTNKYK 240 IPLVLFIGVN HHIQPVLLGC ALIADETIYT FFWLMQTWFT AMGERAPRVI LTDQNNAIKT 300 AIGAVFPQTR HCFCLWHILE KIPRQLEYLS PWLDSFMVKF NKCIFKSWTE EQFEKRWWKL 360 LEKFNLREVE WVQSLYDDRK YWVPTFMRDV SFAGLSTIMR SESVNSSLDK YVRWETSMRE 420 FIEQYRLILE DMYEEEARAD FDSWHETPEL KSPSPFEKQM SFVYTHEIFK KFQFEVLGAA 480 ACHLKKEETE DETTTIYTVK DFEDNQNYMV EWNESKSEIC CLCRSFEYKG YLCRHAIVVL 540 QMSGVFRIPP KYVLQRWTNA ALSRHSISER LDEVQTKVRR YNDLCRRAII LGEEGSLSEE 600 SYNIALCAIK EALKQCANLN NSVENCVGPT TLVSIEEENH SASTSKDVAD AHSISANNSS 660 RRVEAGKEKE NDESNTFRKG KVPQSGSVNG GVPDSFHLVE MCDLSAVQSH NMVSAQLQNV 720 VPTVFHSMTS TQFHSMAPSH LPEARLPR*

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MDSNITTGST IYEPRDDMVF DSHEDAYSFY KEYAKSVGFG TAKLSSRRSR ASREFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASLH VKRRPNGKWY IYSFVKEHNH ELLPAQVHFF  120
RSHRNADPLK NDARIRRRKN MTAVSKLFGA YQNVDCLDGY MRNQHDKGRS LVLEAGDAQI  180
LLELFMHMQE ENPKFFYAVD FNEEHKLRNL FWVDAKGMED YNNFGDVVCF DTTYFTNKYK  240
IPLVLFIGVN HHIQPVLLGC ALIADETIYT FFWLMQTWFT AMGERAPRVI LTDQNNAIKT  300
AIGAVFPQTR HCFCLWHILE KIPRQLEYLS PWLDSFMVKF NKCIFKSWTE EQFEKRWWKL  360
LEKFNLREVE WVQSLYDDRK YWVPTFMRDV SFAGLSTIMR SESVNSSLDK YVRWETSMRE  420
FIEQYRLILE DMYEEEARAD FDSWHETPEL KSPSPFEKQM SFVYTHEIFK KFQFEVLGAA  480
ACHLKKEETE DETTTIYTVK DFEDNQNYMV EWNESKSEIC CLCRSFEYKG YLCRHAIVVL  540
QMSGVFRIPP KYVLQRWTNA ALSRHSISER LDEVQTKVRR YNDLCRRAII LGEEGSLSEE  600
SYNIALCAIK EALKQCANLN NSVENCVGPT TLVSIEEENH SASTSKDVAD AHSISANNSS  660
RRVEAGKEKE NDESNTFRKG KVPQSGSVNG GVPDSFHLVE MCDLSAVQSH NMVSAQLQNV  720
VPTVFHSMTS TQFHSMAPSH LPEARLPR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	ARIRRRKNM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G022100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625708.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2C9V2L0	0.0	A0A2C9V2L0_MANES; Uncharacterized protein
STRING	POPTR_0003s22300.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Manes.10G022100.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]