PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G010300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 333aa    MW: 35806.3 Da    PI: 6.7002
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G010300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-1859108255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Manes.10G010300.1.p  59 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAARAYDRAAIILYG 108
                          59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.40E-2059116No hitNo description
PROSITE profilePS5103222.41859116IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2159117IPR016177DNA-binding domain
SMARTSM003803.5E-3859122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2959116IPR001471AP2/ERF domain
PfamPF008478.3E-1259104IPR001471AP2/ERF domain
PRINTSPR003671.7E-106071IPR001471AP2/ERF domain
PRINTSPR003671.7E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDDSSLHHPP QTTTTTAPAA PSITIATTSD TNSDTSNNSS SDNSRKCKGR GGPDNSKFRY  60
RGVRQRSWGK WVAEIREPRK RTRKWLGTFS TAEDAARAYD RAAIILYGSR AQLNLQPSNF  120
SSAQSSSSSS RGSHSSSTQT LRPLLPRPSG FGFTFSLSAS MPSPALTVAP AAASAASGLD  180
PYGVFNHHHH PNVVGSGVLC PSNIVQNPQE QLMLHHQNPL PDVCNFGDSC STLPITSYQN  240
LNYDYDDHNR YHHQQQQQEL GGGGLYEDIS SLVGSVGSSL SLSSNTQPVI APAGQDPVMH  300
VGPGSPSVWP LAIDEYPPPS IWDYEDPSLF DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1860115359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G010300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626610.10.0ethylene-responsive transcription factor ABI4-like
TrEMBLA0A2C9V2860.0A0A2C9V286_MANES; Uncharacterized protein
STRINGcassava4.1_033353m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-33ERF family protein