PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G002100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 316aa    MW: 35599.2 Da    PI: 6.0719
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G002100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.6e-28157217259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++e+tY+g+H ++
  Manes.10G002100.1.p 157 EDGYTWRKYGQKEILGSRFPRGYYRCTHQklyQCPAKKQVQRLDDDPYTFEVTYRGDHICH 217
                          7****************************9999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-27152218IPR003657WRKY domain
SuperFamilySSF1182904.45E-25153218IPR003657WRKY domain
SMARTSM007748.7E-36156218IPR003657WRKY domain
PfamPF031061.4E-25157217IPR003657WRKY domain
PROSITE profilePS5081121.115157214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDEFISLILQ GVKLAKDLEP AVQNLATHQN QEMISKLDEI IRVFISARER LSSHQDVSQM  60
LQQQQQPQID PSLQEYWLRT KMVELFQSQL MAERMSSSSG LENKQAEGGL AMELSGRDVQ  120
AMASSSAQRP RRRKDDADKR TMRVPAPRMG NTEIPPEDGY TWRKYGQKEI LGSRFPRGYY  180
RCTHQKLYQC PAKKQVQRLD DDPYTFEVTY RGDHICHMSA TAPSVPPPQL PEITREMTQS  240
AMAAQPPPWL EFSLGGSGSS MAAAGPSTVR YGKEAEFPVA DMADVMFNSG SSSSNSMESI  300
FTYMEGKWEP EEKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19157216968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129133PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G002100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276530.0KT827653.1 Manihot esculenta WRKY transcription factor 78 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626555.10.0WRKY transcription factor 55-like
TrEMBLA0A140H8T20.0A0A140H8T2_MANES; WRKY transcription factor 78
STRINGcassava4.1_023169m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-52WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]