PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 354aa MW: 38631.2 Da PI: 5.3757

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G187700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.8	6.1e-28	43	137	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt+qe+l+Li++++ e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e+ ++e++s +++ Manes.09G187700.1.p 43 RWTRQEILVLIQGKKVAENRVRRGRtvgmafgsvQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESHIRDETESFWAM 132 8********************98888889999*******************************************99999999999 PP trihelix 82 fdqle 86 ++l+ Manes.09G187700.1.p 133 RNDLR 137 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-12	43	133	No hit	No description
PROSITE profile	PS50090	6.4	43	109	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.8E-5	43	108	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVLEQQLNLG QNTIDGHPTN GVDIRPLSID GGDDGSKAPR LPRWTRQEIL VLIQGKKVAE 60 NRVRRGRTVG MAFGSVQVEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DYKKIKEWES 120 HIRDETESFW AMRNDLRREK KLPGFFDREV YDILDGVGDV SAVVPGLALA LAPSREPAED 180 VEAVFDSGRS AAAEDGLFSD FEQEEAGGSP EKEPTAAVSA AKEVPPIKAA AAAAGIAAPI 240 PLSEKQYHPA LEADEAQGTT NEKQPTSNPE GGSASHESRK RKRFTTDGDE EAINVQNQLI 300 DILEKNGKLL TAQLEVQNTN FQLEREQRKE HADGLVAVLN KLADALGKIA DKL*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVLEQQLNLG QNTIDGHPTN GVDIRPLSID GGDDGSKAPR LPRWTRQEIL VLIQGKKVAE  60
NRVRRGRTVG MAFGSVQVEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DYKKIKEWES  120
HIRDETESFW AMRNDLRREK KLPGFFDREV YDILDGVGDV SAVVPGLALA LAPSREPAED  180
VEAVFDSGRS AAAEDGLFSD FEQEEAGGSP EKEPTAAVSA AKEVPPIKAA AAAAGIAAPI  240
PLSEKQYHPA LEADEAQGTT NEKQPTSNPE GGSASHESRK RKRFTTDGDE EAINVQNQLI  300
DILEKNGKLL TAQLEVQNTN FQLEREQRKE HADGLVAVLN KLADALGKIA DKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G187700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021623243.1	0.0	trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	1e-126	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2C9VC18	0.0	A0A2C9VC18_MANES; Uncharacterized protein
STRING	cassava4.1_010729m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-125	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Manes.09G187700.1.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]