PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

M-type_MADS

Protein Properties

Length: 240aa MW: 27282.1 Da PI: 9.5588

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G181500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.9	2.3e-17	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r+ tf kR++g+lKK +ELS+LC+++++ ii+ss Manes.09G181500.1.p 11 ISNDSARKGTFKKRKKGLLKKVSELSTLCGVDACAIIYSS 50 9*************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-24	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.185	1	50	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-25	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.81E-20	2	85	No hit	No description
PRINTS	PR00404	9.3E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-17	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MTRKKVKLAY ISNDSARKGT FKKRKKGLLK KVSELSTLCG VDACAIIYSS YDPQPEIWPS 60 PSGAQRVLTK FKNMPEMEQS KKMVNQDSFL RQRISKANEQ LKKQQRDNRK KEMTQVMFQA 120 LVGNSLNNLN MLDLNDLEWL INQNLNEVQN KIDSLKKEAN SSASVAVAGP SGEVKDIAPQ 180 QEAEKQASEM NMEAMQKQPW ITDWINQQQE NMGFLGDDVN VPFWDNNNYN GLWSGPFFP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAYISNDSARKGTFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G181500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021622504.1	1e-176	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-65	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A2C9VDM9	1e-175	A0A2C9VDM9_MANES; Uncharacterized protein
STRING	cassava4.1_020905m	1e-176	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-50	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Manes.09G181500.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]