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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G173200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25325.8 Da PI: 4.2754 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.9 | 2.9e-14 | 29 | 77 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ + r+v eIrdps+ + r++lg+f+taeeAa a++ a++++ g Manes.09G173200.1.p 29 FLGVRRRP-WCRYVEEIRDPST---KERHWLGTFDTAEEAALAYDWAARSMTG 77 67******.**********965...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.9E-25 | 28 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.53 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.40E-23 | 28 | 84 | No hit | No description |
PRINTS | PR00367 | 5.7E-7 | 29 | 40 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-24 | 29 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-16 | 29 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-7 | 31 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-7 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDFANSSSSS PSHSKTTRNQ QGQQEEVRFL GVRRRPWCRY VEEIRDPSTK ERHWLGTFDT 60 AEEAALAYDW AARSMTGFKA RTKFVYSDMP DISALFAPPC QYDCTFNFIA SFPYANSCGL 120 VAADDESVQR DGAGAGGTFQ PIAATMDVGG SNNCPGDNIE LPSLPPDMTS SCCYGSEVGH 180 GFWNESNLFG GSYLGFNVNE FVQQSPLFGR VPSVSDTVTD GLDLGSSSDF LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 25 | 77 | 11 | 64 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G173200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021678632.1 | 1e-119 | ethylene-responsive transcription factor ERF087-like | ||||
TrEMBL | A0A2C9VDX3 | 1e-172 | A0A2C9VDX3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029915m | 1e-173 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 6e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G173200.1.p |