PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G164100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 348aa    MW: 38785.6 Da    PI: 6.5917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G164100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13142193155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  Manes.09G164100.1.p 142 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 193
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.48E-13140197No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13140197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16141205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-10147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MALEAVVYQQ DLFAHTSKEL YNLLGAGTWT YDEVSLGKDD YDHKLCSFDN FLQNQAENFL  60
HGDWKFSSSP PPPPSSMFPH FSEMLQANNP SPDAENANNG LTTVASATDH LLDHSSSSTV  120
AAPRAKRRRS RSRKNKEEIE NQRMTHIAVE RNRRKQMNEY LSVLRSLMPD SYVQRGDQAS  180
IIGGAINFVK ELEQRLQLLG GKKETKEKSS GGGEATSLPF SEFFTFPQYS ITSPTQSENS  240
AAAANETMSA TQSSASIADI EVTMVESHAN LKIRSKRRPK QLLKIVSGLH TMRLTILHLN  300
VTTLHQMVLY SLSVKVEDDC KLSSVDEIAT AVYEMLGRIQ EEYSVMN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142153RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G164100.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622582.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2C9VCK90.0A0A2C9VCK9_MANES; Uncharacterized protein
STRINGcassava4.1_010957m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]