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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G156900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GeBP | ||||||||
Protein Properties | Length: 412aa MW: 45842.4 Da PI: 4.4443 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118.3 | 4.1e-37 | 127 | 221 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lfqrlw++eDei lLqG++d+++++g ++d+ fy ++k++++++++k+qlveK+rrLKkK+++ +k++sgke+sf+++hdq +fe+ Manes.09G156900.1.p 127 LFQRLWTDEDEIELLQGFLDYTTQRG-GNHHDTALFYGQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKISSGKEFSFKSPHDQATFEI 215 79************************.6799*********************************************************** PP DUF573 92 skkiWg 97 s+kiW Manes.09G156900.1.p 216 SRKIWS 221 *****7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-34 | 128 | 221 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MASEQDDAVF GHDLDDDDED SSQSQDDGDD LENDDVMVEN DDVLADEEDE EDLNSVSPSI 60 SSPATVPVAV PSASAVTIAV PNGGDPPSAS VESAPDPKRQ RVETTVVVHQ QEEKKPQPQQ 120 MDESRRLFQR LWTDEDEIEL LQGFLDYTTQ RGGNHHDTAL FYGQIKSKLQ LDFNKNQLVE 180 KLRRLKKKYR NVLNKISSGK EFSFKSPHDQ ATFEISRKIW SSTGQIGVVD GNLDDEEGNP 240 NPNHHNFNDV EIKIEDHKST PRSRKRSRSR LSAPAPSGVK VDDKRVSTEA FVVNTDNTNM 300 NNNTTTSTTT TTNNNSNLNV TFLIEETVKS CLTPLFKELL SNVMAAGPYN GRGIGGLAMN 360 AMPLSFGGGE MMTDDKWRKQ QILELEVYSR RLELVQDQIR AQLEELRSMG G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 269 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G156900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623129.1 | 0.0 | probable transcription factor At3g04930 | ||||
Swissprot | F4K5T4 | 4e-96 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | A0A2C9VDF3 | 0.0 | A0A2C9VDF3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008694m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-54 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G156900.1.p |
Publications ? help Back to Top | |||
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