PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G153000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 328aa    MW: 34823.4 Da    PI: 5.5967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G153000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.4e-10177221554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+a      K + a++L + v+Y+k L
  Manes.09G153000.1.p 177 HSIAERLRRERIAERMKALQELVPTA-----NKSDRAAMLDEIVDYVKFL 221
                          99***********************8.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.67E-11170226No hitNo description
SuperFamilySSF474598.9E-15170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.018172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-15174234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7177221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-11178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFFEQILA VQPGYCGGTG DTGGGEVVGS TMPMMGLQLG TPAAGGLRTN  60
SMGMMPLGLN LEHHGFLRQQ EDGGGALDKN NHTNNNASTT SGINERDSVH IASLFPTFGQ  120
LQTQSIRPTP PPPPPGPPQL HQPFHGQPTP GAVSAVSQPP AIRPRVRARR GQATDPHSIA  180
ERLRRERIAE RMKALQELVP TANKSDRAAM LDEIVDYVKF LRLQVKVLSM SRLGAAGAVA  240
QLVADVPLPS AEGESMEGTN QQDWEKWSND GTEQQVAKLM EEDIGAAMQF LQSKALCIMP  300
ISLASAIFLT HPPDAPSIVK PESNTPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G153000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624311.10.0transcription factor UNE12-like isoform X1
SwissprotO227684e-82UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2C9VCK20.0A0A2C9VCK2_MANES; Uncharacterized protein
STRINGcassava4.1_011723m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]