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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G151200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 357aa MW: 40232 Da PI: 9.8773 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.7 | 8.8e-32 | 289 | 346 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ Manes.09G151200.1.p 289 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGEHNHS 346 9*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.8E-18 | 240 | 285 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-34 | 275 | 346 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 282 | 348 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-27 | 285 | 346 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-39 | 287 | 347 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-27 | 289 | 345 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MNMEEIEEAN KAAVESCHRV VGLLCQPRDQ VPGRNLMMET EETVSKFKRV VSLLSNSFGH 60 GRVRKMKKFR PSLPLNIFLD SPNCTTVLAP KPLQMVPANF LETPVTEMDS KSKSCMQTTT 120 QKCFIENPVL EMNSNARPPL QNPQIKPSQH YQFLQQQQQI QRMQFQQQQQ LKYQADMMYS 180 RSNSGINLKF DGSTCTQAMS STRSYISSLS MDGAVANFNG DSFHLIGVPQ SSDHISQQTK 240 RRCSGRGEDG SVKCGSTGKC HCSKRRKLRV KRSIKVPAIS NKVADIPPDE YSWRKYGQKP 300 IKGSPHPRGY YKCSSLRGCP ARKHVERCLE DPSMLIVTYE GEHNHSRLLS SQSAYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 285 | 345 | 12 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G151200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827620 | 0.0 | KT827620.1 Manihot esculenta WRKY transcription factor 45 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622290.1 | 0.0 | probable WRKY transcription factor 39 | ||||
Swissprot | Q9SR07 | 1e-125 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | A0A140H8P9 | 0.0 | A0A140H8P9_MANES; WRKY transcription factor 45 | ||||
STRING | cassava4.1_010602m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-123 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G151200.1.p |
Publications ? help Back to Top | |||
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