PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G147400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 464aa    MW: 51960.8 Da    PI: 5.4631
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G147400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.92.7e-34234288155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+rWtpeLHe Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+
  Manes.09G147400.1.p 234 KPRMRWTPELHETFVEAVNKLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 288
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.264231291IPR017930Myb domain
SuperFamilySSF466891.36E-18232288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-31233290IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-25234288IPR006447Myb domain, plants
PfamPF002498.4E-11236287IPR001005SANT/Myb domain
PfamPF143792.6E-23321366IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSSSFPVLPT PLEDKYPKLP DSFQIASERE LMRDPVNQQS SPLGPNSGTI KHLLSSSSTF  60
PNELNDSLVS PRGGQSQNSP FIYLSSRNRG TLPVARSHSS HPEELSIALI NHSEEHKDMS  120
WSMDPLHDLL DFPENVTVEN GQVESNIGVI TSEDLSKRTD WHEWADQLIS VDDNLEPNWS  180
DLLNDSNATD VKQKVLKLSS EIPVHQPQIH QHQHLNNGEP YTVANPTCTA PPTKPRMRWT  240
PELHETFVEA VNKLGGSERA TPKGVLKLMN VEGLTIYHVK SHLQKYRTAR YKPEASEGTS  300
ENKLSSIDEM KSLDLKTSIG ITEALRLQME VQKQLHEQLE IQRNLQLRIE QQGRYLQMMF  360
EKQRKMEDEK SNPSSSSMDD DPLVPQSNAV QPSDNNKIQV SEPDHAKLVG DRSESRVALE  420
ESSPSVSRKH KSLANTTDKS LDPKDDESSP ASAKRPRADE TAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-30234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-30234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-30234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-30234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-30234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-30234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-30234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-30234292260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G147400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623447.10.0protein PHR1-LIKE 1-like isoform X1
RefseqXP_021623448.10.0protein PHR1-LIKE 1-like isoform X1
RefseqXP_021623449.10.0protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN51e-113PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A2C9VAY00.0A0A2C9VAY0_MANES; Uncharacterized protein
STRINGcassava4.1_007149m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.21e-109G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]