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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G146100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 21356.5 Da PI: 4.859 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.4e-19 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r r++lg+f t eAaka+++a++kl+g Manes.09G146100.1.p 32 TYRGVRQRT-WGKWVAEIREP---N-RgNRIWLGTFNTSHEAAKAYDQAALKLYG 81 69****999.**********8...2.359***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.90E-30 | 31 | 89 | No hit | No description |
Pfam | PF00847 | 1.6E-14 | 32 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 32 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.695 | 32 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 32 | 90 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-10 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEQEAKDTNQ SMRRSRKGCM KGKGGPENAL CTYRGVRQRT WGKWVAEIRE PNRGNRIWLG 60 TFNTSHEAAK AYDQAALKLY GSSATLNLPQ YCHTAAAAPA NTLSTECQEL GNGIETAASF 120 SSQAVQELGN GAGTCCSSGE MGTAASFSSQ PDSGSVEGGN IMHWPEFGIE TEFLGSCDVG 180 IATVGGEGLN WDGYPEQWSI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 33 | 89 | 6 | 63 | ATERF1 |
3gcc_A | 1e-18 | 33 | 89 | 6 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G146100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621955.1 | 1e-148 | dehydration-responsive element-binding protein 2G-like | ||||
TrEMBL | A0A2C9VCB8 | 1e-146 | A0A2C9VCB8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029523m | 1e-147 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 6e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G146100.1.p |