PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G144100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 371aa    MW: 41856.2 Da    PI: 8.4232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G144100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.27.8e-5481371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yLkkk+++k++++ ++i++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  Manes.09G144100.1.p   8 LPPGFRFHPTDEELILHYLKKKIASKHFPV-SIIADVDIYKFDPWDLPAKAVFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 96 
                          79****************************.89***************8777899*********************************** PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++    +e+ g+kk Lvfykgr pkg kt+W+mheyrl
  Manes.09G144100.1.p  97 VIMASstmASENLGVKKALVFYKGRPPKGIKTNWIMHEYRL 137
                          ***998877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-645171IPR003441NAC domain
PROSITE profilePS5100561.3318171IPR003441NAC domain
PfamPF023651.3E-279137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MKNPQSSLPP GFRFHPTDEE LILHYLKKKI ASKHFPVSII ADVDIYKFDP WDLPAKAVFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIMA SSTMASENLG VKKALVFYKG  120
RPPKGIKTNW IMHEYRLADA PAHNIKPIKP KDSSSTAMRL DDWVLCRIYK KTHASPPSAS  180
AAAAAASDHD HEEEDEEEEQ YVQETLLPSL KNPLSNKSLM PQKSSSFSNL LDAMDYSMLR  240
TFLSDHNQFN INPTGYDSTP SSLLNGAIPE QNFFSNCNPP ANSSSSYLIQ KLPQLSNPIP  300
NIENKLKRPF SSVDEDMHHH PSKKLLNSCS FTNSTSQTDI AYHQYNFLNQ PFLNQQLLLN  360
PHHLQFQGQT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-73517514169NO APICAL MERISTEM PROTEIN
1ut4_B2e-73517514169NO APICAL MERISTEM PROTEIN
1ut7_A2e-73517514169NO APICAL MERISTEM PROTEIN
1ut7_B2e-73517514169NO APICAL MERISTEM PROTEIN
3swm_A2e-73517517172NAC domain-containing protein 19
3swm_B2e-73517517172NAC domain-containing protein 19
3swm_C2e-73517517172NAC domain-containing protein 19
3swm_D2e-73517517172NAC domain-containing protein 19
3swp_A2e-73517517172NAC domain-containing protein 19
3swp_B2e-73517517172NAC domain-containing protein 19
3swp_C2e-73517517172NAC domain-containing protein 19
3swp_D2e-73517517172NAC domain-containing protein 19
4dul_A2e-73517514169NAC domain-containing protein 19
4dul_B2e-73517514169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G144100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051520.0KR605152.1 Manihot esculenta NAC transcription factors 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622412.10.0NAC transcription factor 47
SwissprotQ84TD61e-115NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0M4FKW90.0A0A0M4FKW9_MANES; NAC transcription factors 14
STRINGcassava4.1_010010m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-102NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]