PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G142600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 293aa    MW: 32548.5 Da    PI: 8.2032
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G142600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.9e-17220254135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Manes.09G142600.1.p 220 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 254
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.569214250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.9E-14214251IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.9E-14214268IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15215278No hitNo description
CDDcd002021.80E-11219266No hitNo description
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
PfamPF003203.5E-15220254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDFYRNVTIC GEYHQQEQVL PSPSPCSKLG TAIAPTSPLD DLFSAQNTEV DVSLEWLSVF  60
VEDCLSSTGN CLPAPTSSVQ NKIITPNLPK SSQRKPLQNS QASLERFVIP GKARSKRKRV  120
TSVKTRNPLS SWSQILHFPS SDPPLLQQAY WLADSELIMP QKERTTSNSS NTKTRDSEEE  180
EEEETREEEQ EQVTGVSNNG KEGVAILESS SGQQQQPRRC SHCLAQRTPQ WRAGPLGPKT  240
LCNACGVRYK SGRLLPEYRP AKSPTFVSYL HSNSHKKVME MRTAGSAVFN SY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G142600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622844.10.0GATA transcription factor 5-like
RefseqXP_021622846.10.0GATA transcription factor 5-like
TrEMBLA0A251KNK50.0A0A251KNK5_MANES; Uncharacterized protein
STRINGcassava4.1_013059m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-38GATA transcription factor 9