PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.09G137400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 244aa MW: 26637.9 Da PI: 6.899

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G137400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.8	2.8e-36	43	141	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq e Manes.09G137400.1.p 43 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQAEL 132 7*********************9989**********************************************************99 PP DUF260 90 lkaelallk 98 + ++++l++ Manes.09G137400.1.p 133 AMVQTQLIN 141 998887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.308	42	144	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-36	43	140	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAEPQCDATS DTRRKGIGKR ASAVPVESQS VAETGLPVPA VAPCGACKFL RRKCISGCIF 60 APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPMNRRHEA VVTISYEAQA RLSDPVYGCV 120 STILALQQQA ELAMVQTQLI NSRFAMANVL ENSQQQQQQQ QQLHHQHQQV SLLQPAYSNN 180 SSASTNLINM SNFTSNFELV TDTAPSSHSL EPLHLSRPSH DEEDDEEESR IPGIFADVIL 240 HRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-33	40	149	8	119	LOB family transfactor Ramosa2.1
5ly0_B	3e-33	40	149	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G137400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621992.1	1e-156	LOB domain-containing protein 20-like
Swissprot	Q9SRV3	2e-75	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A2C9VBU3	1e-179	A0A2C9VBU3_MANES; Uncharacterized protein
STRING	cassava4.1_026878m	1e-180	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	8e-74	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Manes.09G137400.1.p