PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G136300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 501aa    MW: 54293.6 Da    PI: 6.0226
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G136300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.2e-39102161261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+++cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Manes.09G136300.1.p 102 PDKIIPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 161
                          7899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2995159IPR003851Zinc finger, Dof-type
PfamPF027011.1E-31104160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.546106160IPR003851Zinc finger, Dof-type
PROSITE patternPS013610108144IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MNGSDMPLSK DPAFKLFGRK IPVPDTQIPA KPPSQNSCSE ITKGETDRLN EDNSGEPDKS  60
AVSGQGKEEN QTPVHETQGT SKPEEDQVET NSVDQEKVFK KPDKIIPCPR CNSLDTKFCY  120
FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYRQLLV SSEGVPITRV  180
DNSDSANHQL VSSVESATTL RPSTTGNGMV LKFGSEAPLC ESMETVLNLE DQKKYAEMSS  240
VNSRDNIEEP SSCGSSMTAS SCRINELPET VAQKELVGLP GSPNELTVPQ PLQCYPVPPW  300
VCPWNPGWNN ATSMAAAHHS VGHPSMPNSI SSSQVQWCPT PVLAIPGFCP PNVPLQFVPA  360
SYWGCMPVWD AGTRNTSLGE SNGCSSPSSS TTTSCCSGNG SPNLGKHSRD SNLMDEEKPE  420
NCILVPKTLR IDDPNEAAKS PLWTTLGLKL DQKSPVPKGT IFKPFENKAE GKEGNVSDSS  480
HILEANPAAL SRSHTFQESS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G136300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624402.10.0cyclic dof factor 1-like
TrEMBLA0A2C9VAS00.0A0A2C9VAS0_MANES; Uncharacterized protein
STRINGcassava4.1_028076m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-66cycling DOF factor 2