PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

WOX

Protein Properties

Length: 260aa MW: 28132.3 Da PI: 6.1602

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G136200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.6	1.4e-15	24	84	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ Manes.09G136200.1.p 24 RPRWNPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVVDANVFYWFQNRRSRSRR 84 89***************99***********************************997 PP
2	Wus_type_Homeobox	105.1	4.4e-34	24	86	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G + d+NVfyWFQNr++R+r+++ Manes.09G136200.1.p 24 RPRWNPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVVDANVFYWFQNRRSRSRRRH 86 79**********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.11	20	85	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-13	20	91	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-7	22	89	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-13	24	84	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-8	24	92	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEHNQGQDAN SRGNHGTERI EPMRPRWNPK PEQILILESI FNSGMVNPPK DETVRIRKLL 60 EKFGSVVDAN VFYWFQNRRS RSRRRHRQMQ ASLAEEKRNK RAQASGGAIH YEGGSGAGGS 120 SSSTSLMGFA NSPSLTVSPS YLLGSSSSVG VGGHEDGAVE SLFLPNEMGF QELDQGSDIS 180 SILCPSGSSN LQYQTGFITV FINGVETEVP GGPIDMKALF GQDAVLIHSS GVAVPCNEFG 240 FLMESLQHGE SYFLVSSQT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G136200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624501.1	0.0	WUSCHEL-related homeobox 11-like isoform X2
Swissprot	Q6X7J3	6e-69	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2C9VAJ8	0.0	A0A2C9VAJ8_MANES; Uncharacterized protein
STRING	cassava4.1_031567m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	2e-33	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Manes.09G136200.1.p

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]