PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G127300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HSF

Protein Properties

Length: 493aa MW: 54738.2 Da PI: 4.9526

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G127300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.9	2.2e-35	12	103	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d+++++++sws++ nsfvv++ ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ eF+++ F kg+k Manes.09G127300.1.p 12 FLSKTYDMVDDPSTNSVVSWSSSDNSFVVWNVPEFQKDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------YEFANEGFLKGQK 92 9******************999**************************************99.........78******* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i rkks Manes.09G127300.1.p 93 HLLKSISRKKS 103 *******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.4E-38	6	96	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.39E-34	7	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.0E-58	8	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-30	12	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-19	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-19	50	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	51	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-19	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MEAVTMNSVP PFLSKTYDMV DDPSTNSVVS WSSSDNSFVV WNVPEFQKDL LPKYFKHSNF 60 SSFVRQLNTY GFRKVDPDRY EFANEGFLKG QKHLLKSISR KKSLNGQSTQ PPQVQSSKVS 120 ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDN QLQTVGQRVQ AMEQRQQQMM 180 SFLAKAMQSP GFLNQLVQQN NESNRLAAGG NKKRRLPRQE EENLAVKTGS NSPNGQIVKF 240 HSSMNEAAKA MLHQILKMNS SSRLEPSINN SAPFLIGNLP SSSALDSSNT SSRISELMLS 300 DVQASFLPVE SAFSASHPCH AVSEVQSPSC VVTDHVKTDF ISEMKMHNSG QDAILPNFAE 360 RQGIMSEISA GVPNTNFVDP ETGVGENTTL MPPVLDVAIP EETDAYSSNQ DTDILMDGIH 420 KLPGINDVFW EQFLAASPIT VDTDEINSSS LLSGMTREQE LQSWQENGQD NIQHINHLTE 480 QMELLTSEGQ MG*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MEAVTMNSVP PFLSKTYDMV DDPSTNSVVS WSSSDNSFVV WNVPEFQKDL LPKYFKHSNF  60
SSFVRQLNTY GFRKVDPDRY EFANEGFLKG QKHLLKSISR KKSLNGQSTQ PPQVQSSKVS  120
ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDN QLQTVGQRVQ AMEQRQQQMM  180
SFLAKAMQSP GFLNQLVQQN NESNRLAAGG NKKRRLPRQE EENLAVKTGS NSPNGQIVKF  240
HSSMNEAAKA MLHQILKMNS SSRLEPSINN SAPFLIGNLP SSSALDSSNT SSRISELMLS  300
DVQASFLPVE SAFSASHPCH AVSEVQSPSC VVTDHVKTDF ISEMKMHNSG QDAILPNFAE  360
RQGIMSEISA GVPNTNFVDP ETGVGENTTL MPPVLDVAIP EETDAYSSNQ DTDILMDGIH  420
KLPGINDVFW EQFLAASPIT VDTDEINSSS LLSGMTREQE LQSWQENGQD NIQHINHLTE  480
QMELLTSEGQ MG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-26	3	101	20	129	Heat shock factor protein 1
5d5v_B	5e-26	3	101	20	129	Heat shock factor protein 1
5d5v_D	5e-26	3	101	20	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G127300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021623526.1	0.0	heat stress transcription factor A-1b
Swissprot	Q84T61	1e-156	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2C9VA84	0.0	A0A2C9VA84_MANES; Uncharacterized protein
STRING	cassava4.1_010915m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1843	31	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-114	heat shock factor 3

Link Out ? help Back to Top
Phytozome	Manes.09G127300.1.p

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]