PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G065400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 320aa    MW: 35099.5 Da    PI: 7.2598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G065400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-141462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+d++++ G+  +W + +++ g++R++k+c++rw++yl
  Manes.09G065400.1.p 14 KGPWSPEEDAKLKDYIEKQGTVgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                         79******************879************************97 PP
2Myb_DNA-binding39.21.6e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g ++ +Ed+++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  Manes.09G065400.1.p  69 GDFSDDEDKIICKLYSNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.057962IPR017930Myb domain
SuperFamilySSF466893.91E-2611109IPR009057Homeodomain-like
SMARTSM007176.5E-111364IPR001005SANT/Myb domain
PfamPF002492.9E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-241569IPR009057Homeodomain-like
CDDcd001673.99E-81662No hitNo description
PROSITE profilePS5129421.7563117IPR017930Myb domain
SMARTSM007173.3E-1167115IPR001005SANT/Myb domain
PfamPF002493.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370117IPR009057Homeodomain-like
CDDcd001671.82E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KQGTVGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDKIIC KLYSNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
MMIHPSQTKL PHQLTTKFAS LLCQASSSSS SIPSSPSTAI SSPSSSYALA RSFTEPIPFS  180
SNNSFTAANK SILPSQESSF VAALENYQMK DSSALLMCGG ETSCSSSDGS CNNQITHEYG  240
GGASSAEQMG LQSYFYNGVE ESQKLVGDGG WSEKQNGLWG ENPIIDYGLE EIKLLISTSS  300
CNNFLFEENK TAEESVMYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G065400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622534.10.0transcription factor RAX2-like
TrEMBLA0A2C9V8C80.0A0A2C9V8C8_MANES; Uncharacterized protein
STRINGcassava4.1_012036m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.14e-71myb domain protein 68