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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G064100.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 540aa MW: 60291.5 Da PI: 8.2212 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.3e-09 | 432 | 479 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+++q+G+g+W+ I + + Rt+ +++++w+++l Manes.09G064100.3.p 432 WTLSEVMKLIDGIAQYGTGRWTDIKKLLFsssAYRTPVDLRDKWRNLL 479 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-13 | 421 | 484 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.519 | 424 | 483 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-9 | 428 | 481 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.18E-16 | 430 | 489 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.90E-17 | 430 | 480 | No hit | No description |
Pfam | PF00249 | 8.3E-8 | 432 | 479 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MDPEANLNKK FANMKCQTVK AGESCVPSLE DETVEVQHLL TEAKPDNAPG DGALCFGKEN 60 AWKHLEIEDF SYGFEYGLRR NCGGLDCNNA QGQDDLELGV LDGLLDEVDE VDDIHAANDI 120 SGACEDFLLD VELAGKISDL DFAHRGGLHL GNSSSESQSP GFSGSSNGAH GLSESSTATI 180 PDSECKNGSV ENKTVKCELN DSSGDNVFTT SHDLENSDEL DDAKRLESGI SSDDNEKKPI 240 QASKMSTLLR QKRSRKPTKR YIEEFSVPKS KHALERQKIL ASETKYKCLT IGSHNELPHG 300 RGQTLIKVES LSETITQETL EDDEKLSDLK SKCMTRRLQI SSASNGKHSK TGSRNELCHV 360 RGLKSAPRDS LAGTSTQASF DSRPRRGRPK KRPYVSTLER DDEHAASESE DDHTKRRKSK 420 KSADRRKHQR MWTLSEVMKL IDGIAQYGTG RWTDIKKLLF SSSAYRTPVD LRDKWRNLLR 480 ASTVQKQKMK QNKKEVEQKL KHAMRPLPKL VIHRILELAT VHPYPRFTPG GRYIRRKKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G064100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623123.1 | 0.0 | uncharacterized protein LOC110622793 isoform X2 | ||||
TrEMBL | A0A251K3T1 | 0.0 | A0A251K3T1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_005037m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 7e-22 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G064100.3.p |