PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G064100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 544aa    MW: 60707.1 Da    PI: 8.3489
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G064100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-09436483448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT  E  +l+d+++q+G+g+W+ I + +      Rt+ +++++w+++l
  Manes.09G064100.1.p 436 WTLSEVMKLIDGIAQYGTGRWTDIKKLLFsssAYRTPVDLRDKWRNLL 483
                          ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-13425488IPR009057Homeodomain-like
PROSITE profilePS5129413.519428487IPR017930Myb domain
SMARTSM007173.1E-9432485IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-16434493IPR009057Homeodomain-like
CDDcd116601.95E-17434484No hitNo description
PfamPF002498.3E-8436483IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MDPEANLNKK FANMKCQTVK AGESCVPSLE DETVEVQHLL TEAKPDNAPG DGALCFGKEN  60
AWKHLEIEDF SYGFEYGLRR NCGGLDCNNA QGQDDLELGV LDGLLDEVDE VDDIHAANDI  120
SGACEDFLLD VELAGKISDL DFAHRGGLHL GNSSSESQSP GFSGSSNGAH GLSESSTATI  180
PDSECKNGSV ENKTVKCELN DSSGDNVFTT SHDLENSDEL DDAKRLESGI SSDDNEKKPI  240
QASKMSTLLR QKRSRKPTKR YIEEFSVPKS KHALERQKIL ASETKYKCLT IGSHNELPHG  300
RGQTLIKVES LSETITQETL EDDEKLSDLK SKCMTRRLQI SSASNGKHSK TGSRNELCHV  360
RGLKSAPRDS LAGTSTQASF DSRPRRGRPK KRPYVSVGKM TLERDDEHAA SESEDDHTKR  420
RKSKKSADRR KHQRMWTLSE VMKLIDGIAQ YGTGRWTDIK KLLFSSSAYR TPVDLRDKWR  480
NLLRASTVQK QKMKQNKKEV EQKLKHAMRP LPKLVIHRIL ELATVHPYPR FTPGGRYIRR  540
KKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G064100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623121.10.0uncharacterized protein LOC110622793 isoform X1
RefseqXP_021623122.10.0uncharacterized protein LOC110622793 isoform X1
TrEMBLA0A251KKV00.0A0A251KKV0_MANES; Uncharacterized protein
STRINGcassava4.1_005037m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.27e-22TRF-like 6