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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G063000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 140aa MW: 16047.5 Da PI: 4.557 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 3.7e-10 | 2 | 26 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 g W++Iar+++ gRt++++k++w+++l Manes.09G063000.1.p 2 G-WAKIARRLP-GRTDNEIKNYWRTHL 26 5.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.651 | 1 | 30 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.1E-8 | 2 | 26 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.18E-8 | 2 | 33 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-7 | 3 | 26 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-12 | 3 | 31 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MGWAKIARRL PGRTDNEIKN YWRTHLKKKL QAQEGKQDFL YQKTDPSSWN YDMEEYKSVG 60 TTESSLDQNY ELSSFTYLNS PYETRLHDWM SSELSGDQTE VKIHGDSGGF DSSFCYLKLN 120 SEDGDTSVSD SLGSLWDMN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G063000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623814.1 | 1e-96 | transcription factor MYB27-like | ||||
Swissprot | Q9SCP1 | 2e-17 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A2C9VA17 | 2e-98 | A0A2C9VA17_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022314m | 2e-84 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 1e-19 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G063000.1.p |
Publications ? help Back to Top | |||
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