PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G061200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 479aa    MW: 54483.2 Da    PI: 6.1567
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G061200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.11.1e-23112211186
             trihelix   1 rWtkqevlaLiearremeerlrr.gk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sess 76 
                          +Wt+++v++Li a+ +++++ +  g+            +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+t ++++
  Manes.09G061200.1.p 112 KWTDSMVRLLIMAVFYIGDEAGPeGNdptgkkkagglsQKKGKWKSVSRAMMEKGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTgCKVV 201
                          7**************99988885133555666777777**********************************************779*** PP

             trihelix  77 stcpyfdqle 86 
                          ++ ++++ ++
  Manes.09G061200.1.p 202 ENQSLLETMD 211
                          ****999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-21110236No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEHNGLPGGI FSGMGSGMLG LEMPLQQQQQ QNPQNPQNSP HLHHPQMLGY GQHESDNHHP  60
QSQQAMKHGY PYASSTARQK PQSTVSDEDE PGFNGDDTTD GKRKVSPWQR MKWTDSMVRL  120
LIMAVFYIGD EAGPEGNDPT GKKKAGGLSQ KKGKWKSVSR AMMEKGFFVS PQQCEDKFND  180
LNKRYKRVND ILGKGTGCKV VENQSLLETM DLSPKMKEEV KKLLNSKHLF FREMCAYHNS  240
CGHGSSGVAT DQSNPQHPQA SSHAQQQRCS HSSETAQFMT HSRSETEGSK MAKRGSNEED  300
DEEDDDESEE DEDDSDDEVD EAIEGNSRGH KNCDHGHEDE DDHDEKGSKK RQRTEVFSLS  360
SAMMQQLNSD LVSVIQDGAK STWEKKHWMK LRLMQLEEQQ VSYQCQAFEL EKQRLKWVKF  420
SSKKEREMER AKLENERRRL ESERMVLLIR QKELELLDLH QQQQISSNKR SDPSSITG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G061200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622201.10.0ESF1 homolog
RefseqXP_021622202.10.0ESF1 homolog
RefseqXP_021622203.10.0ESF1 homolog
TrEMBLA0A251K4M80.0A0A251K4M8_MANES; Uncharacterized protein
STRINGcassava4.1_006702m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.16e-77sequence-specific DNA binding transcription factors