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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G052800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 32508 Da PI: 6.3185 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.8 | 4.9e-45 | 15 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgy 82 lppG+rF Pt+eelv++yL++k+egk+ l ++++i+ +diy+++Pw+Lp+ ++++ + ++w+fF++r++++a+g r++r t++gy Manes.09G052800.1.p 15 LPPGIRFYPTEEELVSFYLQNKLEGKRldliLAMDRIIPVLDIYEFNPWQLPQyagELSSrDPEQWFFFIPRQESEARGGRPKRLTSEGY 104 79*************************8776666678999************6455333324559************************* PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+ +v+s +++ +g+k+t+vfy+grap+g+ktdW m+ey++ Manes.09G052800.1.p 105 WKATGSPGHVYS-NNRSIGMKRTMVFYRGRAPNGRKTDWKMNEYKA 149 ************.9999***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-49 | 10 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.53 | 15 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-22 | 16 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MSELYSQPNK KMEDLPPGIR FYPTEEELVS FYLQNKLEGK RLDLILAMDR IIPVLDIYEF 60 NPWQLPQYAG ELSSRDPEQW FFFIPRQESE ARGGRPKRLT SEGYWKATGS PGHVYSNNRS 120 IGMKRTMVFY RGRAPNGRKT DWKMNEYKAV QPDSSSSSST AAASPTLRHE FSLCRVYKKS 180 KNMRAFDRRP VGVDEEIMRS HHQAAAPASA IIQADHHEST TSSHDLQNPP MALERSNSAA 240 GSSSSEDHAP DINPSQTDET SSSLMSLDTQ PSWDWDQLDW YYGGSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-37 | 15 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-37 | 15 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-37 | 15 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-37 | 15 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-37 | 15 | 179 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-37 | 15 | 179 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G052800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605171 | 0.0 | KR605171.1 Manihot esculenta NAC transcription factors 33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622764.1 | 0.0 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-74 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2C9V824 | 0.0 | A0A2C9V824_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013664m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-72 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G052800.1.p |
Publications ? help Back to Top | |||
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