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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G045600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TALE | ||||||||
Protein Properties | Length: 673aa MW: 72894 Da PI: 8.155 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 372 | 409 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Manes.09G045600.1.p 372 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 409 554459******************************88 PP | |||||||
2 | BELL | 126.3 | 1.1e-40 | 236 | 307 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAl++iS++FrcLkdai++qi Manes.09G045600.1.p 236 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALQTISKQFRCLKDAITGQI 307 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.0E-67 | 160 | 305 | IPR006563 | POX domain |
Pfam | PF07526 | 3.2E-51 | 165 | 304 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 350 | 413 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-9 | 353 | 417 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.35E-12 | 353 | 414 | No hit | No description |
SuperFamily | SSF46689 | 8.55E-17 | 354 | 419 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.6E-29 | 356 | 419 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 370 | 409 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MATYFHGNPE IQAAAAASAE GLQTLVLMNP TYVQYSDTPP SSNNLLFLNS AANNLSSPPH 60 LSHAPPNTQQ FVGIPLDPNS HDTSTLHGLI PRIHYNLYNP VDPSSAARDT PRAQQGLSLS 120 LSSQQQPGYG SQAQAVSGED IRVSGGSASS GSGVTNNGVS GIQGVLLSSK YLKAAQELLD 180 EVVNVNNHGI KNELSKKSNG INSNNSNKVV GESSGGDGSA GGDAGGKRGA ELTTAERQEI 240 QMKKAKLISM LDEVEQRYRQ YHHQMQIVIS SFEQAAGIGS AKTYTALALQ TISKQFRCLK 300 DAITGQIKAA NKSLGEEDCL GGKIEGSRLK FVDHHLRQQR ALQQLGMIQH NAWRPQRGLP 360 ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL 420 EEIKEQERNG SEDKSSKSEH NENSASKSVL QERGSVNENQ TKSFKSFDSS PNQNAPAISI 480 SAASTSPVAG NVRNHSGFSL IGSSELEGIT QGSPKRPRST ELIQSPTSVP SMDVKPGETN 540 NDQISMKFGN GRQSRDGYSF IGGQTNFIGG FGQYPIGELG RFDTEQFTPR FPGNAVSLTL 600 GLPHCENLSL SGTHQSFLPS QNIQLGRRVE IGEPNEFGGI NTSTPHSSTA YESINIQNRK 660 RFAAQLLPDF VA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-16 | 359 | 416 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 359 | 416 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G045600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622322.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021622323.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021622324.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021622325.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021622326.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021622327.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021622328.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A251K3T2 | 0.0 | A0A251K3T2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003045m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-159 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G045600.1.p |
Publications ? help Back to Top | |||
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