PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G036700.4.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 454aa MW: 52890.3 Da PI: 8.3673

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G036700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.8	4.2e-24	11	96	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++Y+k++GF+vrk k ++s ng i +r f Cs+eg+r++++ + + ++ +r+etrtgC+a+++ + e +gkw+++++ +eHnH+l Manes.09G036700.4.p 11 EFYKKYSKRIGFTVRKGKVHRS-SNGDIRERFFFCSREGFRSKKQAN-KLTKFKRKETRTGCRARIRCTVE-NGKWVISQFCQEHNHQL 96 6*****************99.7788*************999.99999*************9.**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-21	11	96	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-22	194	288	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MVFSSDGEVY EFYKKYSKRI GFTVRKGKVH RSSNGDIRER FFFCSREGFR SKKQANKLTK 60 FKRKETRTGC RARIRCTVEN GKWVISQFCQ EHNHQLDGFS KTFEPYLVLP TRNEAGATKY 120 FEFGKMGCST YVHEAKINSL QAEDAQSLIN YFRHMQVEDS SFFYAVQVDA NGCMTNFFWT 180 DGRSKIDYEY FGDVLILDTA FKMDKFGMIC APFLGLNHHQ QYVLFGCAFL LDKSNDSFCW 240 LFETFMEAMR RRQPKTIFTD EGQPMVDAVK MVMPEANHQL GLWYVFRNVS KHLPTYYGQP 300 DFASLFNKCI SGCDTQEEFE SRWSSLLEQF DLHKNACLNT LYMYRKRWAH VFNKRTFGAG 360 IHCLENIKNI FQNFTSETMS LPKFVQQYFL AAEQQRREEL YEDFHCNGSA PEMTLHYGLV 420 EKQAASMYIH LHSVLCVPGG VEKTFISGVK GNF*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MVFSSDGEVY EFYKKYSKRI GFTVRKGKVH RSSNGDIRER FFFCSREGFR SKKQANKLTK  60
FKRKETRTGC RARIRCTVEN GKWVISQFCQ EHNHQLDGFS KTFEPYLVLP TRNEAGATKY  120
FEFGKMGCST YVHEAKINSL QAEDAQSLIN YFRHMQVEDS SFFYAVQVDA NGCMTNFFWT  180
DGRSKIDYEY FGDVLILDTA FKMDKFGMIC APFLGLNHHQ QYVLFGCAFL LDKSNDSFCW  240
LFETFMEAMR RRQPKTIFTD EGQPMVDAVK MVMPEANHQL GLWYVFRNVS KHLPTYYGQP  300
DFASLFNKCI SGCDTQEEFE SRWSSLLEQF DLHKNACLNT LYMYRKRWAH VFNKRTFGAG  360
IHCLENIKNI FQNFTSETMS LPKFVQQYFL AAEQQRREEL YEDFHCNGSA PEMTLHYGLV  420
EKQAASMYIH LHSVLCVPGG VEKTFISGVK GNF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G036700.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624522.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2C9V7L6	0.0	A0A2C9V7L6_MANES; Uncharacterized protein
STRING	POPTR_0149s00230.1	1e-169	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-73	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.09G036700.4.p