PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Manes.09G036700.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 524aa MW: 60530.3 Da PI: 6.6845

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G036700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.5	5.3e-24	81	166	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++Y+k++GF+vrk k ++s ng i +r f Cs+eg+r++++ + + ++ +r+etrtgC+a+++ + e +gkw+++++ +eHnH+l Manes.09G036700.2.p 81 EFYKKYSKRIGFTVRKGKVHRS-SNGDIRERFFFCSREGFRSKKQAN-KLTKFKRKETRTGCRARIRCTVE-NGKWVISQFCQEHNHQL 166 6*****************99.7788*************999.99999*************9.**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-21	81	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-22	264	358	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MKNHVGIFQD ETLDNSTENC ASFDIHSLSS ESEEDDALSS SSNEDEIQSL STFNASKGTQ 60 EDNFQVPELG MVFSSDGEVY EFYKKYSKRI GFTVRKGKVH RSSNGDIRER FFFCSREGFR 120 SKKQANKLTK FKRKETRTGC RARIRCTVEN GKWVISQFCQ EHNHQLDGFS KTFEPYLVLP 180 TRNEAGATKY FEFGKMGCST YVHEAKINSL QAEDAQSLIN YFRHMQVEDS SFFYAVQVDA 240 NGCMTNFFWT DGRSKIDYEY FGDVLILDTA FKMDKFGMIC APFLGLNHHQ QYVLFGCAFL 300 LDKSNDSFCW LFETFMEAMR RRQPKTIFTD EGQPMVDAVK MVMPEANHQL GLWYVFRNVS 360 KHLPTYYGQP DFASLFNKCI SGCDTQEEFE SRWSSLLEQF DLHKNACLNT LYMYRKRWAH 420 VFNKRTFGAG IHCLENIKNI FQNFTSETMS LPKFVQQYFL AAEQQRREEL YEDFHCNGSA 480 PEMTLHYGLV EKQAASMYIH LHSVLCVPGG VEKTFISGVK GNF*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MKNHVGIFQD ETLDNSTENC ASFDIHSLSS ESEEDDALSS SSNEDEIQSL STFNASKGTQ  60
EDNFQVPELG MVFSSDGEVY EFYKKYSKRI GFTVRKGKVH RSSNGDIRER FFFCSREGFR  120
SKKQANKLTK FKRKETRTGC RARIRCTVEN GKWVISQFCQ EHNHQLDGFS KTFEPYLVLP  180
TRNEAGATKY FEFGKMGCST YVHEAKINSL QAEDAQSLIN YFRHMQVEDS SFFYAVQVDA  240
NGCMTNFFWT DGRSKIDYEY FGDVLILDTA FKMDKFGMIC APFLGLNHHQ QYVLFGCAFL  300
LDKSNDSFCW LFETFMEAMR RRQPKTIFTD EGQPMVDAVK MVMPEANHQL GLWYVFRNVS  360
KHLPTYYGQP DFASLFNKCI SGCDTQEEFE SRWSSLLEQF DLHKNACLNT LYMYRKRWAH  420
VFNKRTFGAG IHCLENIKNI FQNFTSETMS LPKFVQQYFL AAEQQRREEL YEDFHCNGSA  480
PEMTLHYGLV EKQAASMYIH LHSVLCVPGG VEKTFISGVK GNF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G036700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624522.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2C9V7L6	0.0	A0A2C9V7L6_MANES; Uncharacterized protein
STRING	XP_006482039.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-73	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.09G036700.2.p