PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G036600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family FAR1
Protein Properties Length: 473aa    MW: 53273.9 Da    PI: 7.0396
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G036600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.46.7e-25191276189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          +fY++YAk +GF vrk k ++s  ng i +r f Cs+eg+r++++ + + ++ +r+etrtgC+a+++ + e +gkw++++++++HnH+l
  Manes.09G036600.1.p 191 EFYSRYAKGIGFIVRKGKVRRS-SNGDIRERFFFCSREGFRSKKQAN-KLTKFKRKETRTGCRARMRCTVE-NGKWVISQFSQKHNHQL 276
                          6********************9.7788*****************999.99999*****************9.****************9 PP
2Homeobox44.32.9e-14378429556
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++keq   Lee F+++++++ ++r  LA++ +L  +qV  WF NrRa  k
  Manes.09G036600.1.p 378 LRLSKEQSAFLEESFKEHSTVNPKQRLALARQFNLRYDQVELWFGNRRASTK 429
                          5689*********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-22191276IPR004330FAR1 DNA binding domain
PfamPF046182.7E-5302353IPR006712HD-ZIP protein, N-terminal
PROSITE profilePS5007113.653371431IPR001356Homeobox domain
SMARTSM003899.4E-9373435IPR001356Homeobox domain
SuperFamilySSF466892.18E-13376438IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-12376429IPR009057Homeodomain-like
CDDcd000862.11E-9376432No hitNo description
PfamPF000465.8E-12378429IPR001356Homeobox domain
PfamPF021833.0E-7431465IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.4E-16431472IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAETSHSVTR AAATLSSMGA AQHSNMDFWY DVYTKNQEDS VVGPSRLDYE WGYVFGNSSP  60
KTKKRKKDVG STSTACSNSD LSEALSAISA HLSLSSSGSS SREGDQYQDT DKDVAGFMKN  120
HAGIPQDETL DNSMENCSSF DTHSMSSESD EDDELSSNSN EDEMQAEGTQ KDHFQVPELG  180
TAFSSEGEAY EFYSRYAKGI GFIVRKGKVR RSSNGDIRER FFFCSREGFR SKKQANKLTK  240
FKRKETRTGC RARMRCTVEN GKWVISQFSQ KHNHQLYGFT KTSEPNLASR DEATVAKDAG  300
AVKYFEFAKM DFMASERVST EESDRGFDIN RLPVEEAEEG AALSSPNSGM SSFRMDFGIR  360
SSGGGRCNKR DTEALKKLRL SKEQSAFLEE SFKEHSTVNP KQRLALARQF NLRYDQVELW  420
FGNRRASTKL KQAEVDSEFL KRCCQTLTEE NRRLQKELQE LRALKAFHLP DF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G036600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624136.10.0homeobox protein engrailed-like SMOX-2
RefseqXP_021624137.10.0homeobox protein engrailed-like SMOX-2
TrEMBLA0A2C9V8V60.0A0A2C9V8V6_MANES; Uncharacterized protein
STRINGcassava4.1_007389m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-49homeobox from Arabidopsis thaliana