PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G031000.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 369aa MW: 40571.4 Da PI: 8.9966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G031000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	296	341	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av YIk+Lq Manes.09G031000.2.p 296 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVVYIKDLQ 341 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.589	290	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-15	293	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.67E-11	294	343	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-13	295	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	296	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-12	296	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDSSSNHSYH HQSNQPSSGL LRFRSAPSSL LANFNDNGVS DDSVLSFQEF EDRSAVRVRE 60 SPLSYANSPQ SYSCLPPHYP RQSSATTSSA MDSSYGLMGS MAMGHHEQAK RLDSNLARLN 120 SSPAGFIDLC VQNGYATMKG MGIHAGVNGT NGEGSPRLKS QLSFPARIPS SLSMLSPMSA 180 IESESIDAAS PDSGKLRNGN CDARAYTATG FPYGSWNDSN FAENFNSMKR DPDDNGKLFS 240 NIQNGELVNR VNSLSHHLSL PKTSVDMVAM EKLLNFQDTV PCKIRAKRGC ATHPRSIAER 300 VRRTRISERM RKLQELVPNM DKQTNTADML DLAVVYIKDL QKQYKTLSDI RAHCKCSNKQ 360 KPVQHQIV*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDSSSNHSYH HQSNQPSSGL LRFRSAPSSL LANFNDNGVS DDSVLSFQEF EDRSAVRVRE  60
SPLSYANSPQ SYSCLPPHYP RQSSATTSSA MDSSYGLMGS MAMGHHEQAK RLDSNLARLN  120
SSPAGFIDLC VQNGYATMKG MGIHAGVNGT NGEGSPRLKS QLSFPARIPS SLSMLSPMSA  180
IESESIDAAS PDSGKLRNGN CDARAYTATG FPYGSWNDSN FAENFNSMKR DPDDNGKLFS  240
NIQNGELVNR VNSLSHHLSL PKTSVDMVAM EKLLNFQDTV PCKIRAKRGC ATHPRSIAER  300
VRRTRISERM RKLQELVPNM DKQTNTADML DLAVVYIKDL QKQYKTLSDI RAHCKCSNKQ  360
KPVQHQIV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G031000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021622088.1	0.0	transcription factor bHLH130-like isoform X2
Swissprot	Q66GR3	2e-99	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2C9V7D4	0.0	A0A2C9V7D4_MANES; Uncharacterized protein
STRING	cassava4.1_010046m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-95	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.09G031000.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]