PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Manes.09G030600.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 285aa MW: 31101.8 Da PI: 7.7885

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G030600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.2e-07	219	245	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + Manes.09G030600.3.p 219 SHSLAERARREKINARMKLLQELVPGC 245 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.87E-5	213	260	No hit	No description
SuperFamily	SSF47459	2.88E-8	213	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.477	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-8	218	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-5	219	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEIPTGPGVR SSPMVPQPDE TGLDSVQFGE DIQHLISVPP ENASSFTALL ELPPNQAVEL 60 LHSPDSTLRA RTVIDTHHHK PYLQPHFNGA SLSFPTNSGL IERAARFSVF AGENLNNTSN 120 NSAETSSVPS NSSANLEKVV KSEPAEAESY LNPSQPLVSD PTTVENEAQN QRPVKRKERE 180 KKGKGSTKKS KSSGNDNSED AEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE 240 LVPGCNKVEH VLHSRIIAEY AFQIISLVAT SIFLNCSALS KLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G030600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021623009.1	0.0	transcription factor bHLH60-like
Swissprot	Q3EAI1	3e-66	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A2C9V797	0.0	A0A2C9V797_MANES; Uncharacterized protein
STRING	cassava4.1_009861m	1e-180	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	3e-61	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.09G030600.3.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]