PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G030600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 27715.8 Da PI: 7.8359 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.7 | 1.8e-07 | 219 | 245 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + Manes.09G030600.2.p 219 SHSLAERARREKINARMKLLQELVPGC 245 8************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-8 | 213 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.80E-5 | 213 | 247 | No hit | No description |
PROSITE profile | PS50888 | 11.236 | 215 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-8 | 218 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-5 | 219 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEIPTGPGVR SSPMVPQPDE TGLDSVQFGE DIQHLISVPP ENASSFTALL ELPPNQAVEL 60 LHSPDSTLRA RTVIDTHHHK PYLQPHFNGA SLSFPTNSGL IERAARFSVF AGENLNNTSN 120 NSAETSSVPS NSSANLEKVV KSEPAEAESY LNPSQPLVSD PTTVENEAQN QRPVKRKERE 180 KKGKGSTKKS KSSGNDNSED AEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE 240 LVPGCNKPIG PFRG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G030600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623009.1 | 1e-179 | transcription factor bHLH60-like | ||||
Swissprot | Q3EAI1 | 5e-66 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A2C9V7F4 | 0.0 | A0A2C9V7F4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009861m | 1e-178 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G030600.2.p |
Publications ? help Back to Top | |||
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