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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G030600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 38883.2 Da PI: 5.8522 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.7e-07 | 219 | 245 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + Manes.09G030600.1.p 219 SHSLAERARREKINARMKLLQELVPGC 245 8************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.2E-8 | 213 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.84E-5 | 213 | 247 | No hit | No description |
PROSITE profile | PS50888 | 9.127 | 215 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-8 | 218 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-5 | 219 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEIPTGPGVR SSPMVPQPDE TGLDSVQFGE DIQHLISVPP ENASSFTALL ELPPNQAVEL 60 LHSPDSTLRA RTVIDTHHHK PYLQPHFNGA SLSFPTNSGL IERAARFSVF AGENLNNTSN 120 NSAETSSVPS NSSANLEKVV KSEPAEAESY LNPSQPLVSD PTTVENEAQN QRPVKRKERE 180 KKGKGSTKKS KSSGNDNSED AEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE 240 LVPGCNKFLS MRLAAVNPRI DFNLDSILAA EGGSLIDSNF PSMVMPLMWP EVQVNGNRQN 300 YQQQWQFDTV NQPVWGREED GYNFITPENS LLSYDSSANS ATLHSNPLKM EL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G030600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623009.1 | 0.0 | transcription factor bHLH60-like | ||||
Swissprot | Q8VZ02 | 6e-80 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A2C9V8W0 | 0.0 | A0A2C9V8W0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009861m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4985 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-92 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G030600.1.p |
Publications ? help Back to Top | |||
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