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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G028500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 32714.7 Da PI: 6.2457 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9e-20 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g Manes.09G028500.1.p 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.28E-32 | 28 | 88 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-13 | 29 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.748 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 29 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-38 | 29 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MENSRRSPLK PWKKGPARGK GGPQNAMCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA 60 TAEEAAMAYD EAARRLYGPD AYLNLPHLQP SSINPLITSK SQKFKWIPSN NFIPMFPSCG 120 LLNIHAQPSV HVIHQRLQEL KKNGVLGQSS NVSNSSSSDS RNEANIVNDR THVENHIVME 180 KDVEITSEKM VRYDEEKPQI DLNEFLQQLG ILKVEGKPEN NDATESCVEQ VSLLNDDDKD 240 NNLAAVADKS FNWDSLIEMH GIADHLTAES SSLQVHDVQE DPAFPIWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-18 | 30 | 86 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G028500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621954.1 | 0.0 | dehydration-responsive element-binding protein 2F | ||||
Swissprot | Q9SVX5 | 1e-91 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A2C9V8M7 | 0.0 | A0A2C9V8M7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028446m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 9e-80 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G028500.1.p |
Publications ? help Back to Top | |||
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