PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G026400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 849aa    MW: 94210.6 Da    PI: 5.5819
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G026400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09786839246
                          SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                            WTteE+e l+++v+++ +       Wk+I ++      +gRt  ++k++w++
  Manes.09G026400.1.p 786 VHWTTEEEEMLKEGVQKFSNVgeraiPWKKILEYGSsvflNGRTTVDLKDKWRN 839
                          57****************9879************9999999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.87E-9518570IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.662520569IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.104.1E-8521569IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002493.6E-6522567IPR001965Zinc finger, PHD-type
PROSITE patternPS013590523566IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.642780841IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-12781843IPR009057Homeodomain-like
SuperFamilySSF466898.97E-11782842IPR009057Homeodomain-like
SMARTSM007179.6E-5784843IPR001005SANT/Myb domain
PfamPF002493.0E-6786839IPR001005SANT/Myb domain
CDDcd116602.69E-15788842No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MGDPSSSASS LEWLWTIEYL ARFRQLDPSI LHHLIDAAPV LSEHLGKSTR EMVSLRCLEQ  60
LFGIGNGVPN DVPSVGEPKR TFDFSGTCED ALKSILKETS VSDLRMTRSD VLRWDIHPFI  120
THKRACMPKC ALEKLKDEIS KGTHPNAAAL TELIGVVHKN DENGKITVDS GHHNAVTGRI  180
DSDETDAQVM APEESTNSLP LENKNGMVGG DSHHRNLLPL KRNKSSLDNE NPAGEHQEDQ  240
GGVGNGDLLL NVKRVKSNTM CISNSTERSF ILQNGKRLVE DSSEKLVRVK EKGSCQMERE  300
SQIRLAECKS LENGHDNFVA TKELGNSHNV GVSADFLNNQ CENAGNANRM QSDRSGDGPS  360
QHILVDEVHE AEHILVGVKE RGSCQMQRES QIGELAECRS LENGHDKFVA TKELGDSHNA  420
GVNADFQHNQ SESAGDANKM QSDRSGDGPS HHISVDSLSG LHRDAAVEKL GGMEHLCQED  480
TSSDGDEYHL RKVDVAMEKS HFLSSQCTLN HVSPTNWTEL HLCVKCSKDG QLLVCNAVGC  540
PLVVHKECLG SLPRFDEEGN FYCPFCSYSL AISEYMEAKK KASLARRELS AFIHKQTESS  600
HSKEHNNLNQ DGDEDDMSGN VRESESNQTN NGGYAFEVNS QLEKRRGDKQ PVEPTVSCSD  660
IKLINQEEDP DVTHAITNVS TGEKEREEMA SECLTVGGLE RQDQTFANPK CNGDNPMRKD  720
SECFPLNGKQ AGVIEKNVLE QQSSDQENIS DEGNKENLVS NYSIRFQRRE KQYLSPAIPQ  780
LRRKKVHWTT EEEEMLKEGV QKFSNVGERA IPWKKILEYG SSVFLNGRTT VDLKDKWRNI  840
CKGSPKCK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G026400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623324.10.0uncharacterized protein LOC110622911
RefseqXP_021623325.10.0uncharacterized protein LOC110622911
RefseqXP_021623326.10.0uncharacterized protein LOC110622911
TrEMBLA0A2C9V8K50.0A0A2C9V8K5_MANES; Uncharacterized protein
STRINGcassava4.1_003693m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-08MYB_related family protein