PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G170600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 329aa    MW: 37124.7 Da    PI: 6.1886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G170600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.62.9e-24128189159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDg++WrKYGqK++ ++++pr+Y+rCt++   gC+++k+v+r +++p +  +tY g+H+++
  Manes.08G170600.1.p 128 VDDGHAWRKYGQKVILNAKHPRNYFRCTHKfdqGCQATKQVQRIEDEPPMYRTTYYGHHTCK 189
                          59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-26117190IPR003657WRKY domain
PROSITE profilePS5081120.771123186IPR003657WRKY domain
SuperFamilySSF1182903.53E-25124189IPR003657WRKY domain
SMARTSM007749.0E-39128190IPR003657WRKY domain
PfamPF031067.2E-25129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MESCWPENLP SDRRKAIDEL VKGREFANQL KAFLCDSAGD DGSMTAEDLV VKILNTFTSS  60
LSILNRVETD AVSQFPASTQ VGSPFWDGRK SEDSEESSKS TSTRKDRRGC YKRRRTSQSW  120
VRESSVLVDD GHAWRKYGQK VILNAKHPRN YFRCTHKFDQ GCQATKQVQR IEDEPPMYRT  180
TYYGHHTCKN LVKPCHLFLD ASDDADATES SMLLSFNSSA NGNGHLHHDH PTNKQDTPIF  240
SSFRSIKQEY NNELPRNDDH HLTHKQSSSS DYLVTLEDTF DPADVISGVN SSCSTSTTTA  300
HHSSDIDMIG TSVHNLFDDG LECYFDYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-24128189869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G170600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275930.0KT827593.1 Manihot esculenta WRKY transcription factor 18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619295.10.0probable WRKY transcription factor 70
TrEMBLA0A140H8M20.0A0A140H8M2_MANES; WRKY transcription factor 18
STRINGcassava4.1_011680m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-31WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]