PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G152100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 502aa MW: 54241.6 Da PI: 7.311

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G152100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.2e-39	104	162	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Manes.08G152100.1.p 104 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKH 162 7899*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	96	161	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.8E-32	106	162	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	108	162	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	110	146	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MNGSDMPLSK DPAFKLFGRK IPVPNTQIPA KPPSQNSCNE LKKGGTDGPN DDNSGEPNKS 60 NASGTAKEES QTPMLVDETK GTSKSNVDQV ENNSVDQEKV FKKPDKILPC PRCNSLDTKF 120 CYFNNYNVNQ PRHFCKNCQR YWTAGGTMRN VPIGAGRRKN KHLAYQYRQI LVSSEGVPIT 180 RMENSDSANH QVVSSVDSAI TLSPSTTGNG MVLKFGPEAP LCESMETVLD LRDQQKYAEM 240 SSVNCQDNTE EPSSCGSSMT ATGCQGNELP ETVMQKELVG LPGSRNDLGV SNPMHCYPVT 300 QWVFPWNPSW NNATSTAAAQ HSAGQPCIPN SNNSSQVQWC PTPILAVPGF VPPNIPLQFV 360 PASYWGCMPV WAARTGNKSL NGSNGCSSPS SSTSTSCCFG NGSPNLGKHS RDSNLMNEDK 420 AENCILVPKT LRIDDPNEAS KSPLWATLGL KLYEKNPVPK GTIFKTCEIK ADGKGHASEA 480 THILEANPAA LSRSHTFQES S*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MNGSDMPLSK DPAFKLFGRK IPVPNTQIPA KPPSQNSCNE LKKGGTDGPN DDNSGEPNKS  60
NASGTAKEES QTPMLVDETK GTSKSNVDQV ENNSVDQEKV FKKPDKILPC PRCNSLDTKF  120
CYFNNYNVNQ PRHFCKNCQR YWTAGGTMRN VPIGAGRRKN KHLAYQYRQI LVSSEGVPIT  180
RMENSDSANH QVVSSVDSAI TLSPSTTGNG MVLKFGPEAP LCESMETVLD LRDQQKYAEM  240
SSVNCQDNTE EPSSCGSSMT ATGCQGNELP ETVMQKELVG LPGSRNDLGV SNPMHCYPVT  300
QWVFPWNPSW NNATSTAAAQ HSAGQPCIPN SNNSSQVQWC PTPILAVPGF VPPNIPLQFV  360
PASYWGCMPV WAARTGNKSL NGSNGCSSPS SSTSTSCCFG NGSPNLGKHS RDSNLMNEDK  420
AENCILVPKT LRIDDPNEAS KSPLWATLGL KLYEKNPVPK GTIFKTCEIK ADGKGHASEA  480
THILEANPAA LSRSHTFQES S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G152100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021619368.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A2C9VIW8	0.0	A0A2C9VIW8_MANES; Uncharacterized protein
STRING	cassava4.1_030713m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	4e-47	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Manes.08G152100.1.p