PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G148000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 367aa MW: 41408.4 Da PI: 5.7007 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.4 | 1.1e-56 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdee++++yL++kv ++ +++ +i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdk Manes.08G148000.1.p 16 LPPGFRFHPTDEEIITHYLTEKVMNSCFSA-CAIGEVDLNKSEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDK 104 79*************************999.67***************99999************************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ k+ lvg+kktLvfy+grapkgekt+Wvmheyrle Manes.08G148000.1.p 105 EIYKGKNCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 143 ****99999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-63 | 12 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.675 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-30 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEGAVVVNKG EDLIDLPPGF RFHPTDEEII THYLTEKVMN SCFSACAIGE VDLNKSEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYKGK NCLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEY RLEGKFSYYN LPKASKDEWV VCRVFHKSTG IKKTSIQDLL 180 RVNSFGDDFL DYSSLPPLMD PPQYNRPGSS SFNDEDDEFK AMINNNQNYL HHQLPNSSYE 240 APITSTFYSQ IPASSPLFTF QTTPTMSGYF PSSSFGANEQ TILRALAANT ETSVQEKHCK 300 VEQFSSNQSV ATLSQDTGLS TDINTTTTEI SSVVSKQEIG SNKLYDNLEG PSSVSPIADL 360 EVLWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-53 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-53 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G148000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605153 | 0.0 | KR605153.1 Manihot esculenta NAC transcription factors 15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620729.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FK44 | 1e-121 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0M4FBP6 | 0.0 | A0A0M4FBP6_MANES; NAC transcription factors 15 | ||||
STRING | cassava4.1_010179m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-123 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G148000.1.p |
Publications ? help Back to Top | |||
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