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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Manes.08G145400.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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| Family |
ERF |
| Protein Properties |
Length: 278aa MW: 31562 Da PI: 5.4461 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.08G145400.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 57.7 | 2.8e-18 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++ GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g
Manes.08G145400.1.p 36 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDQAACLLRG 85
799******.7*********32...35**********************99987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MEIQFQQQKQ HKKSGVLMNK TSKFKGRNKS NNNNNKFVGV RQRPSGRWVA EIKDTTQKIR 60
MWLGTFETAE EAARAYDQAA CLLRGSNTRT NFITHVSLDS PLASRIRNLL NNKKSGQEQP 120
REEENLEIST PSTSILSREN LEVSTPSNST LSSSSSASDT NTPSNEIIND TQFFDNVYKP 180
DMSNCREEFE LGSSPSDLSW SSGPGFDRFP FSQEVLDFPR HTLLPETITS HLEFTEFDRM 240
KVERQISASL YAMNGVQEYM ETVHDPVEAF WDLPPIY*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}. |
| UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
| UniProt | INDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}. |
| Publications
? help Back to Top |
- Cerri MR, et al.
Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
Plant Physiol., 2012. 160(4): p. 2155-72
[PMID:23077241] - Tang H, et al.
An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
BMC Genomics, 2014. 15: p. 312
[PMID:24767513] - Cerri MR, et al.
The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection.
Plant Physiol., 2016. 171(2): p. 1037-54
[PMID:27208242] - Yano K, et al.
Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
DNA Res., 2017. 24(2): p. 193-203
[PMID:28028038] - Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
[PMID:28068194] - Cerri MR, et al.
The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
New Phytol., 2017. 215(1): p. 323-337
[PMID:28503742]
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