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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G140700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 179aa MW: 20046.4 Da PI: 8.3972 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 95.3 | 5.1e-30 | 20 | 75 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++++Y+eC++NhA+ +Gg+a DGCgEf+p+ g++gt++al C AC+CHRnFHR+e Manes.08G140700.1.p 20 TTIKYRECRRNHAVLIGGYAADGCGEFTPK-GDQGTKEALLCEACDCHRNFHRKELI 75 5789*************************9.9999*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-17 | 21 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.0E-28 | 22 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-26 | 23 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.22 | 24 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MLMANSKSKS KQLHEESTET TIKYRECRRN HAVLIGGYAA DGCGEFTPKG DQGTKEALLC 60 EACDCHRNFH RKELIKNGTA FPGSQHFPSP YGLRCPMGKE RNVSGFYYPL PAVSSQPSPS 120 PYCHHCWQRN VQSLVSDEES VIYNGSENEM QTKTGKRPKK GTHINAEQEK SGHYDLHR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G140700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620800.1 | 1e-133 | zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A2C9VG80 | 1e-132 | A0A2C9VG80_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032076m | 1e-113 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17111 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 6e-23 | homeobox protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G140700.1.p |